Abstract: The success of the deep cooperation between schools and enterprises will produce significant benefits to both of them. In actual operation, enterprises pay more attention to the direct and indirect economic benefit, which is different from schools focusing on the education and scientific research. Different from the traditional single angle on the overall evaluation of school-enterprise cooperation, this paper puts forward a multidirectional evaluation thought to the single subject in school-enterprise cooperation. This paper establishes the evaluation index system from the school management point of view. It analyzes enterprise performance in school-enterprise cooperation with comprehensive assessment method and fuzzy DEA evaluation and then evaluates the weight of these two evaluations in order to get the third party evaluation results. Through the analysis, this paper makes a suggestion for the schools on how to choose the cooperative enterprises, and for enterprises on how to enhance efficiency of the input and output during the cooperation.